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Root cell atlas

WebFeb 4, 2024 · OsAUX1 facilitates primary root and root hair elongation in response to phosphate and cadmium stress (Yu et al., 2015; Giri et al., 2024), but its role in inflorescence development remains unclear. In situ hybridization confirmed that OsAUX1 was expressed in BM and SMs (Figs 6e, S8a), which was consistent with the scRNA-seq analysis (Fig. 6b). WebThe Rice Root Cell Atlas Revealed Root architecture is a highly dynamic trait and contributes to plant adaptation to its environment. Many dicotyledonous plants such as Arabidopsis …

Spatiotemporal Developmental Trajectories in the Arabidopsis Root …

WebApr 5, 2024 · Integrative analysis of shoot and root apical cell populations further reveals common and distinct features of epidermal and vascular tissues. Our results, thus, offer a valuable resource for investigating the basic principles underlying cell division and differentiation in plants at single-cell resolution. Keywords: WebOct 20, 2024 · All root cell types identified in the previous study ( Shulse et al., 2024 )—including columella, cortex, cortex/hair, endodermis, hair, nonhair, and stele—can be recovered from our scRNA-seq data, and the expression of the marker genes that were previously identified being specifically expressed in certain cell types remained confined … hand motion logmar https://escocapitalgroup.com

Single-cell analysis of cell identity in the Arabidopsis root apical ...

WebMay 3, 2024 · Photos by Melissa Ha, CC BY-NC . Figure 11.1.2. 2: Corn root cross section. The major regions of the root are labeled in the cross section above. The epidermis is the … WebCellaVision CellAtlas is an app developed by CellaVision in close partnership with morphology experts from around the world. It combines a series of mini lectures with an … WebThe Arabidopsis root scRNA-Seq expression atlas can be accessed in two forms: one where genes induced during the necessary protoplasting procedure (fold change >2; q <0.05) are … business analytics and management rsm

Root Cell Atlas

Category:A single-cell Arabidopsis root atlas reveals developmental …

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Root cell atlas

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WebFeb 8, 2024 · The resulting atlas ordination consists of cells organized within continuous branches corresponding to four major root tissues (Dolan et al., 1993), each connected to … WebAug 1, 2024 · A root phloem pole cell atlas reveals common transcriptional states in protophloem-adjacent cells Authors: Sofía Otero University of Cambridge Iris Gildea Pawel Roszak University of...

Root cell atlas

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WebMar 8, 2024 · A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and Uwe Ohler at Humboldt Universität zu … WebDenyer and Ma et al. generate a single-cell RNA expression atlas of the Arabidopsis root that captures spatiotemporal information for all major cell types and uncovers new regulators. Pseudotime-analysis-derived developmental trajectories depict a cascade of developmental progressions between stem cell and final differentiation mirrored by waves of …

WebApr 13, 2024 · Legumes form symbiosis with rhizobium leading to the development of nitrogen-fixing nodules. By integrating single-nucleus and spatial transcriptomics, we established a cell atlas of soybean ... WebFeb 7, 2024 · Integration of over 110,000 cells produces an organ-scale atlas To build an atlas, we used the 10X Genomics scRNA-seq platform to profile over 96,000 root cells. …

WebApr 13, 2024 · The rightmost panel is integrated analysis plotted on the basis of the results shown in d. b, Integration of three single-nucleus datasets. c, Top: UMAP visualization of … WebFeb 9, 2024 · The atlas was generated using a technique called single-cell RNA-sequencing, which samples gene expression from individual cells. By condensing the data to three dimensions, the result is a colorful swirl of dots (110,427 dots to be exact), with each dot representing one cell.

WebOct 20, 2024 · Single-cell transcriptome atlas for the rice root. A: Visualization of the nine root cell types on the UMAP graph; dots represent individual cells from the two root …

WebApr 6, 2024 · Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root Root development relies on the establishment of meristematic tissues that give rise to distinct cell types that differentiate across defined temporal and spatial gradients. business analytics and operations researchWebApr 6, 2024 · The single-cell transcriptome atlas enabled us to identify most of the major cell types of the rice radicle (Supplementary Note 2 ). Clusters 1, 4 and 9 belonged to the epidermis/root hair... hand motherhttp://www.elabcaas.cn/rcar/index.html business analytics and its typesWebA single-cell RNA sequencing pofiles the developmental landscape of Arabidopsis root Supplementary website Upload gene list Violin Plot UMAP Plot t-SNE Plot Cluster Legend … h and m osloWebJan 7, 2024 · Here, we enriched vascular cells from Arabidopsis leaves to generate a single-cell transcriptome atlas of leaf vasculature. We identified at least 19 cell clusters, encompassing epidermis, guard cells, hydathodes, mesophyll, and all vascular cell types, and used metabolic pathway analysis to define their roles. business analytics and optimizationWebMar 25, 2024 · The nearly five thousand root cells profiled form a high-resolution atlas that captures all major cell types and developmental stages, including the scarce cells of the QC and niche. With this atlas, we can predict with precision the spatiotemporal patterns of gene expression within the root, as demonstrated by our reporter lines. business analytics and management science mscWebSingle-cell sequencing has recently allowed the generation of exhaustive root cell atlases. However, some cell types are elusive and remain underrepresented. Here we use a … business analytics and reporting